Korean Journal of Breeding Science :eISSN 2287-5174 / pISSN 0250-3360

Table. 3.

Summary of sequence data amount.

raw sequencing data after quality trimming (Q20) after read mapping



nucleotides (Gbp) nucleotides (Gbp) sequencing depth (X) nucleotides (Gbp) average mapping depth (X) Covered 3+ sites (Mbp)z mapping coverage (%)y
Dongjin 20.7 17.2 46.13 15.0 40.18 350.5 93.90
dwf1 13.9 11.9 31.83 9.9 26.55 352.9 94.54
dwf1/Dongjin F2MPx 29.1 21.4 57.43 15.8 42.23 355.4 95.21

zsites in Nipponbare reference genome sequence where over 3 reads were mapped.

ypercent of covered 3+ sites in Nipponbare reference sequence.

xmutant type DNA pool of dwf1/ Dongjin F2 population.

Korean J. Breed. Sci. 2020;52:9-19 https://doi.org/10.9787/KJBS.2020.52.1.9
© 2020 Korean J. Breed. Sci.