Korean Journal of Breeding Science :eISSN 2287-5174 / pISSN 0250-3360

Table. 4.

Number of detected SNPs on chromosomes.

Chromosome Comparison pairz

DJ-NP SNP dwf1-NP SNP DJ-dwf1* SNP DJ-dwf1homo SNP F2MP-NP SNP DJ-dwf1 homo SNP-F2MP common
1 5,020 4,974 2,231 548 5,180 406
2 5,702 5,107 2,626 1,310 5,913 1,014
3 2,150 2,093 1,216 159 2,085 119
4 15,613 10,902 6,805 5,045 15,376 3,303
5 12,702 2,690 11,931 10,467 10,642 7,360
6 9,449 9,072 1,650 374 9,824 319
7 24,303 20,384 5,705 4,072 24,904 2,950
8 12,500 3,231 10,768 9,126 10,183 6,365
9 3,713 6,820 6,875 5,826 7,280 4,571
10 11,851 7,961 5,631 3,894 11,022 2,532
11 56,185 52,226 2,759 674 58,574 337
12 66,365 59,799 2,893 891 68,193 588
Total 225,553 185,259 61,090 42,386 229,176 29,864

zDJ-NP SNP = SNP between Dongjin and Nipponbare, dwf1-NP SNP = SNP between dwf1 and Nipponbare, DJ-dwf1* SNP = SNP between Dongjin and dwf1, DJ-dwf1 homo SNP = homozygous SNP between Dongjin and dwf1, F2MP-NP SNP = SNP between F2MP (mutant type DNA pool of dwf1/ Dongjin F2 population) and Nipponbare, DJ-dwf1 homo SNP-F2MP common = common SNP of homozygous SNP between Dongjin and dwf1 and SNP between F2MP and Nipponbare.

Korean J. Breed. Sci. 2020;52:9-19 https://doi.org/10.9787/KJBS.2020.52.1.9
© 2020 Korean J. Breed. Sci.