Korean Journal of Breeding Science :eISSN 2287-5174 / pISSN 0250-3360

Table. 5.

List of SNPs in the dwf1 target region and their SNP-index.

Position Reference nucleotide Dongjin nucleotide dwf1 nucleotide No. of Dongjin allelesz No. of dwf1 allelesy SNP-index
23,469,810 C C A 0 55 1.00
23,546,254 T T A 1 35 0.97
23,637,440 T T G 41 472 0.92
24,652,472 - - A (Ins)x 4 16 0.80
24,787,274 G G A 2 30 0.94
25,328,061 T T A 0 44 1.00
25,423,834 A A T 1 45 0.98
25,851,000 G G A 6 48 0.89
25,970,046 T T A 10 31 0.76
26,040,458 C C T 3 39 0.93
26,045,753 T T A 1 53 0.98
26,130,501 T T C 4 50 0.93
26,310,900 A A T 5 27 0.84
26,385,509 A A C 7 48 0.87
26,539,330 A A T 4 43 0.91
27,265,670 A A T 2 45 0.96
27,393,577 T T A 7 23 0.77
27,416,635 - - T (Ins) 7 8 0.53
27,423,468 G G A 4 28 0.88
27,655,011 T T A 10 27 0.73
27,656,683 G G A 8 28 0.78
27,851,565 G G T 8 49 0.86
27,865,807 C C A 4 37 0.90
27,911,046 C C T 1 39 0.98
28,042,325 G G A 2 35 0.95
28,109,890 G G A 8 17 0.68
28,151,383 A A T 2 15 0.88
28,153,342 T T A 7 39 0.85
28,196,188 A A T 3 27 0.90
28,260,138 C C A 6 38 0.86
28,334,098 C C T 8 30 0.79
28,575,184 C C A 1 19 0.95
29,071,503 G G A 6 23 0.79

zNo. of Dongjin alleles in F2MP (mutant type DNA pool of dwf1/ Dongjin F2 population) sequencing data.

yNo. of dwf1 alleles in F2MP (mutant type DNA pool of dwf1/ Dongjin F2 population) sequencing data.

xIns indicates insertion.

Korean J. Breed. Sci. 2020;52:9-19 https://doi.org/10.9787/KJBS.2020.52.1.9
© 2020 Korean J. Breed. Sci.