Korean Journal of Breeding Science :eISSN 2287-5174 / pISSN 0250-3360

Table. 1.

Statistics of number of markers after filtration from GBS results of BC1F1 and BC2F1 tomato lines.

Chromosome BC1F1 population (182ea) before filtered BC1F1 population (182ea) after filtered BC2F1 population (94ea) before filtered BC2F1 population (94ea) after filtered




No. of SNPs Avg. missing rate No. of SNPs Avg. missing rate No. of SNPs Avg. missing rate No. of SNPs Avg. missing rate
SL3.0ch00 26,054 37.74% 1,373 14.27% 9,095 13.46% 829 7.20%
SL3.0ch01 21,218 49.64% 181 18.07% 6,146 12.99% 277 10.26%
SL3.0ch02 16,553 49.92% 115 19.58% 4,281 16.48% 101 10.10%
SL3.0ch03 17,317 47.57% 180 15.56% 5,209 12.81% 243 9.89%
SL3.0ch04 15,624 52.83% 238 17.58% 4,157 12.36% 373 10.64%
SL3.0ch05 11,607 51.24% 91 20.37% 3,421 11.21% 211 11.02%
SL3.0ch06 21,208 50.49% 669 17.45% 5,979 10.16% 1,027 9.05%
SL3.0ch07 12,953 50.04% 118 18.99% 4,074 12.86% 183 11.03%
SL3.0ch08 13,199 48.09% 85 18.47% 3,651 16.35% 97 10.70%
SL3.0ch09 21,821 68.65% 366 18.23% 3,121 10.73% 665 10.54%
SL3.0ch10 11,847 52.15% 116 19.66% 3,575 12.91% 220 10.99%
SL3.0ch11 16,602 52.68% 260 1.10% 4,460 12.67% 335 10.19%
SL3.0ch12 13,809 55.08% 268 17.34% 4,045 10.58% 345 10.80%

Total 219,812 51.24% 4,060 16.67% 61,214 12.74% 4,906 10.19%
Korean J. Breed. Sci. 2020;52:374-81 https://doi.org/10.9787/KJBS.2020.52.4.374
© 2020 Korean J. Breed. Sci.