Korean Journal of Breeding Science :eISSN 2287-5174 / pISSN 0250-3360

Table. 3.

Single nucleotide polymorphism (SNP) markers significantly associated with resistance to the respective P. sojae isolates 40412 and 2457.

Chrz Position (bp)y SNP IDx Daepung allele Socheong2 allele Isolate 40412 Isolate 2457


p-valuew R2v p-value R2
3 37,333,127 AX-90503578 GG AA 2.59E-04 0.17 0.46ns 0.01
3 37,334,818 AX-90519491 TT GG 3.29E-04 0.16 0.47ns 0.01
3 37,335,337 AX-90450060 GG TT 1.61E-04 0.18 0.41ns 0.01
3 37,344,323 AX-90342280 TT CC 5.08E-04 0.15 0.47ns 0.01
3 37,363,386 AX-90474027 CC TT 9.09E-04 0.14 0.50ns 0.01
3 37,368,009 AX-90388967 AA GG 2.59E-04 0.17 0.47ns 0.01
3 37,368,208 AX-90494336 CC AA 9.09E-04 0.14 0.38ns 0.01
3 37,370,680 AX-90446372 TT CC 9.09E-04 0.14 0.31ns 0.02
3 37,439,152 AX-90495209 AA CC 7.34E-04 0.15 0.61ns 0.00
3 37,444,515 AX-90509464 TT CC 5.08E-04 0.15 0.36ns 0.01
3 37,459,809 AX-90519469 TT GG 3.29E-04 0.16 0.47ns 0.01
3 37,467,706 AX-90356936 CC AA 2.59E-04 0.17 0.47ns 0.01
3 37,469,105 AX-90453921 CC TT 3.29E-04 0.16 0.38ns 0.01

18 2,171,155 AX-90398103 TT AA 0.26ns 0.02 4.9E-05 0.23
18 2,230,149 AX-90414070 AA GG 0.26ns 0.02 4.9E-05 0.23
18 2,596,324 AX-90476798 GG AA 0.29ns 0.02 1.4E-05 0.26
18 2,600,739 AX-90392402 AA GG 0.29ns 0.02 1.4E-05 0.26
18 2,601,706 AX-90340260 CC TT 0.29ns 0.02 1.4E-05 0.26
18 2,623,988 AX-90380020 CC TT 0.29ns 0.02 1.4E-05 0.26
18 2,628,360 AX-90523863 TT GG 0.36ns 0.01 4.4E-05 0.23
18 2,678,291 AX-90465601 CC TT 0.36ns 0.01 4.4E-05 0.23
18 2,679,563 AX-90470626 TT CC 0.36ns 0.01 4.4E-05 0.23
18 2,692,919 AX-90321765 GG AA 0.36ns 0.01 4.4E-05 0.23

zChromosome

yPhysical positions are based on the soybean genome Glyma2 (http://soybase.org)

xMarkers significantly associated with the resistance to P. sojae via linkage analysis are indicated in bold.

wThe letter “ns” following numbers denotes statistical insignificance.

vPhenotypic variance explained by the marker.

Korean J. Breed. Sci. 2020;52:398-407 https://doi.org/10.9787/KJBS.2020.52.4.398
© 2020 Korean J. Breed. Sci.