Korean Journal of Breeding Science :eISSN 2287-5174 / pISSN 0250-3360

Table. 1.

Summary of the whole genome re-sequencing data from 6 Korean malting barley varieties mapped on the reference genome.

Variety Raw data GC (%) Q20 (%) Trimmed data Mapped sites (≥1ⅹ) Coveragez (%, ≥1ⅹ) Unique Mapped
reads
Unique Mapped
bases (G)
Average Depth (x)
Reads Bases Reads Bases
Baegho 381,623,896 57,625,208,296 45.33 97.21 349,954,170 51,157,143,212 3,609,902,559 74.67 211,145,586 30,739,038,802 6.36
Heugho 368,894,520 55,703,072,520 44.13 96.71 337,298,954 48,931,317,035 3,556,629,274 73.57 225,856,360 32,646,145,093 6.75
Hopum 375,231,692 56,659,985,492 43.25 97.03 339,927,448 49,728,159,348 3,528,123,120 72.98 228,389,808 33,338,308,609 6.90
Jinyangbori 459,411,158 69,371,084,858 43.60 97.00 415,528,674 60,747,757,588 3,622,925,028 74.94 270,323,156 39,415,505,443 8.15
Kwangmaeg 483,584,162 73,021,208,462 43.88 96.82 436,794,186 63,853,842,734 3,629,680,786 75.08 285,828,020 41,691,539,837 8.62
Nurimaeg 624,036,920 94,229,574,920 44.13 97.22 572,775,358 83,888,403,648 3,715,825,654 76.86 358,477,728 52,354,131,893 10.83
Mean 448,797,058 67,768,355,758 44.05 97.00 408,713,132 59,717,770,594 3,610,514,404 74.68 263,336,776 38,364,111,613 7.85

zCoverage: Mapped sites/reference sites×100, reference genome size: 4,834,432,680 bp.

Korean J. Breed. Sci. 2021;53:266-76 https://doi.org/10.9787/KJBS.2021.53.3.266
© 2021 Korean J. Breed. Sci.