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"Chang-Gi Back"

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"Chang-Gi Back"

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Watermelon (Citrullus lanatus) is an economically important vegetable crop all over the world, which has functional compounds such as lycopene and citrulline. Gummy stem blight caused by Didymella bryoniae is one of the most devastative diseases in watermelon. Single nucleotide polymorphisms (SNPs), which are genetic variations occurring between individuals with respect to a single base, were often used to construct genetic linkage maps and develop molecular markers linked to a variety of horticultural traits and resistance to several diseases. In this study, we developed high-resolution melting (HRM) markers based on SNPs generated from NGS resequencing of two parents in watermelon. Plant materials were C. lanatus ‘920533’ (female and susceptible parent), C. amarus ‘PI 189225’ (male and resistant parent), and their F1 and F2 progenies. A total of 13.6 Gbp (‘920533’) and 13.1 Gbp (‘PI 189225’) of genomic sequences were obtained using NGS analysis. A total of 6.09 million SNPs between ‘920533’ and ‘PI 189225’ were detected, and 354,860 SNPs were identified as potential HRM primer sets. From these, a total of 330 primer sets for HRM analysis were designed. As a result, a total of 61 HRM markers that have polymorphic melting curves were developed. These HRM markers can be used for the construction of SNP-based linkage maps and for the analysis of quantitative trait loci (QTLs) related to gummy stem blight resistance.

Citations

Citations to this article as recorded by  
  • Development of gene-based markers for black fruit color traits based on GBS-GWAS analysis of tomato germplasms
    Yeweon An, Jaegyun An, Yongtaek Jeon, Yunjeong Park, Hyunhee An, Bohyun Ki, Yeonhee Choi, Jonggwon Song, Jundae Lee
    Horticulture, Environment, and Biotechnology.2025; 66(6): 1675.     CrossRef
  • Identification of a novel locus C2 controlling canary yellow flesh color in watermelons
    Girim Park, Durre Shahwar, Gaeun Jang, Jagyeong Shin, Gibeom Kwon, Younjae Kim, Chang Oh Hong, Bingkui Jin, Hoytaek Kim, Oakjin Lee, Younghoon Park
    Frontiers in Genetics.2023;[Epub]     CrossRef
  • QTL Mapping for Gummy Stem Blight Resistance in Watermelon (Citrullus spp.)
    Eun Su Lee, Do-Sun Kim, Sang Gyu Kim, Yun-Chan Huh, Chang-Gi Back, Ye-Rin Lee, Muhammad Irfan Siddique, Koeun Han, Hye-Eun Lee, Jundae Lee
    Plants.2021; 10(3): 500.     CrossRef
  • Characterization of Watermelon (Citrullus lanatus) Accessions Introduced from USDA
    Kyung Jun Lee, Jung-Ro Lee, Gyu-Taek Cho, Myoung-Jae Shin, Seong-Hoon Kim, Sookyeong Lee, Sea-Hee Han, Do Yoon Hyun
    Korean Journal of Breeding Science.2019; 51(4): 357.     CrossRef
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In this study, we compared disease incidence rate and phyllosphere microbial community between drought resistance transgenic rice (Agb0103) and non-transgenic Ilmi (NGM) during 2011-2014 to examine an environmental risk assessment of drought resistance transgenic rice (Agb0103). As the results, major diseases such as sheath blight, brown spot, leaf blast and false smut were occurred, however, there were no significant disease incidence rate between Agb0103 and NGM. As the results of counting bacterial and fungal viable cell, the colonies were increased or decreased which affected by environmental conditions, however there were no differences between Agb0103 and NGM. Also unweighted pair-group method with arithmetic averaging (UPGMA) analysis based on polymerase chain reaction with denaturing gel electrophoresis (PCR-DGGE) revealed that DGGE band pattern of bacterial and fungal communities were clustered by each month and there were no differences between Agb0103 and NGM. Furthermore, isolated casual agents causing sheath blight and brown spot were collected from Agb0103 and NGM, and they revealed that each of pathogens were no differences in morphology and pathogenicity. Therefore, our results suggested that Agb0103 showed no differences in disease incidence rate, characteristic of pathogens and phyllosphere community with NGM. In this way, it can be assumed that transgenic rice Agb0103 could not influence phyllosphere microorganism community and environmental conditions.

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  • Nutritional Assessment for Grain and Whole Rice Plant of Drought-tolerant GM Rice (Agb0103)
    Young-Tack Lee, Yong-Hwa Cho
    Journal of the Korean Society of International Agricultue.2018; 30(3): 233.     CrossRef
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