The decrease in seed vigor and grain quality during storage has become an increasingly critical issue due to the extended storage periods resulting from declining rice consumption and climate change in Korea. Despite its importance, few studies have investigated rice seed aging in a large number of Korean rice cultivars. In this study, 53 japonica rice cultivars were evaluated for seed germination, vigor, and grain quality-related traits under accelerated-aging conditions. Seed germination rate was evaluated 7 days after imbibition, following accelerated aging treatments at 42℃ and 95% relative humidity for 8, 12, and 16 days. The average germination rates were 72.9% in the control (0 d), 71.7% after 8 days, 59.0% after 12 days, and 5.6% after 16 days of treatment. Grain quality-related traits, including texture and pasting properties, were also evaluated in rice subjected to the accelerated aging treatment. Adhesiveness and stickiness decreased, whereas hardness and toughness increased, as seed aging progressed. Cluster analysis based on germination rates after accelerated aging identified three distinct clusters, with cultivars in Cluster 3 maintaining a high germination rate of 70.6% even after 12 days of aging, showing clear differences from the other clusters. A principal component analysis (PCA) was conducted to investigate the relationship between germination rate and grain quality-related traits. The results showed that the germination rate and hardness tended to be negatively associated across all three clusters. These results suggested that cultivars with higher germination rates tend to maintain a softer cooked rice texture after aging. Our results provide insight into the relationship between seed aging and grain quality, highlighting elite cultivars that maintain both germination ability and grain quality during storage as valuable resources for breeding programs.

The rice cultivar ‘JJ644wx’ was developed to improve disease resistance and lodging tolerance of Korean japonica glutinous rice cultivars. ‘JJ644wx’ was derived from a cross between ‘HR27814-B-47-1-1’ (‘Sinjinbaek’), a multiple disease-resistant mid-late maturing elite line, and ‘HR29676-AC29’, a medium-maturing glutinous line with lodging tolerance. To shorten the breeding period, an anther culture method was applied to F₁ plants. ‘JJ644wx’ was selected through the pedigree method, yield trials, and local adaptability tests, with high selection pressure for disease resistance and lodging tolerance. The heading date of ‘JJ644wx’ was August 11th, four days later than that of ‘Sinseonchal’. ‘JJ644wx’ exhibited strong tolerance to lodging with a short culm length. The 1,000-grain weight of brown rice of ‘JJ644wx’ was heavier than that of ‘Sinseonchal’, and its yield was 553 kg/10a, which was 10% higher than that of ‘Sinseonchal’. ‘JJ644wx’ had a higher milling performance than ‘Sinseonchal’, but a lower head rice ratio due to a higher percentage of broken rice. ‘JJ644wx’ tended to be situated between ‘Sinseonchal’ and ‘Dongjinchal’ in terms of pasting and texture characteristics. ‘JJ644wx’ is the only Korean japonica glutinous rice cultivar resistant to the most virulent bacterial blight race, K3a; it also showed resistance to rice blast and stripe virus. ‘JJ644wx’ is expected to be a valuable resource that could contribute to improving the cultivation stability of Korean japonica glutinous rice in response to climate change (Registration No. 9606).

The rice cultivar ‘Chamdongjin’ was developed to enhance the disease resistance of ‘Sindongjin’. ‘Sindongjin’, developed by the RDA in 1999, is a mega-variety with a unique grain size and excellent taste, and has been cultivated in the largest area in Korea since 2018. As ‘Sindongjin’ has been cultivated in a large area recently, problems such as pest damage are increasing, and the necessity to develop alternative cultivars is emerging. Accordingly, the multiple disease-resistant, mid-late maturing rice cultivar ‘Chamdongjin’, carrying the bacterial blight resistance gene Xa21 into the genetic background of ‘Sindongjin’, was developed. ‘Chamdongjin’ was developed by the backcrossing method using the donor parent ‘HR27195-59-3-5-5’, harboring the bacterial blight resistance genes Xa3+Xa21 and the recurrent parent ‘Sindongjin’. ‘Chamdongjin’ was selected through the pedigree method, yield trials, and local adaptability tests, with a high selection pressure for agronomic trait similarities with ‘Sindongjin’. In order to effectively improve the disease resistance, marker-assisted selection for disease resistance genes and bioassays for bacterial blight, blast, and stripe virus were performed in parallel. ‘Chamdongjin’ was confirmed to have three disease-resistance genes, Xa3+Xa21+Stvb-i. Most of agronomic traits of ‘Chamdongjin’ were similar to ‘Sindongjin’, while ‘Chamdongjin’ showed enhanced disease resistance against bacterial blight and panicle blast compared to ‘Sindongjin’. ‘Chamdongjin’, like ‘Sindongjin’, possessed a grain size-related gene, the gs3 allele, and exhibited larger grains than general Korean japonica cultivars. In addition, ‘Chamdongjin’ showed a similar or higher level of palatability compared to ‘Sindognjin’, indicating the excellent quality characteristics. In the genetic background analysis using 787 KASP markers, ‘Chamdongjin’ showed 96.3% homozygosity with ‘Sindongjin’, indicating that it had a more similar genetic background to ‘Sindongjin’ than to other existing cultivars. ‘Chamgdongjin’ is expected to be widely cultivated as an alternative to ‘Sindongjin’, which could maintain the brand value while preventing the disease damage caused to ‘Sindongjin’ (Registration No. 9310).

Rice blast is one of the most serious agricultural diseases in the world. Rice blast can be managed using low nitrogen fertilizers, treatment with chemical fungicides, and the most effective resistant varieties. Many genetic resources have been investigated and used along with molecular markers to breed blast-resistant rice varieties. In this study, the genetic diversity of blast resistance genes using 27 functional/linked markers and rice blast incidence over three years was investigated in 296 Korean rice varieties. Blast incidence was determined using a 0-9 scoring system (0=no lesions to 9=dead leaves) in nursery tests. The blast incidence of 296 rice varieties showed a significant correlation between years (r>0.64, p<0.001). The 261 Japonica varieties showed blast resistance compared to 114 mid-late maturing varieties or 96 medium-maturing varieties. 35 Tongil-type varieties also exhibited greater resistance than Japonica varieties. DNA marker-trait association analysis was conducted using 27 DNA markers linked to 19 blast resistance genes. Twelve DNA markers showed significant associations with the average blast incidence over 3 years. The ‘9871.T7E’ marker linked with Pi40 was strongly associated with blast disease, with a phenotypic variance of 24% over 3 years (p<0.001). Among the varieties harboring the Pi40 allele, early maturing varieties accounted for 87%. These results imply that the blast resistance of early maturing Korean varieties is associated with the Pi40 gene. These results will be beneficial for breeding blast-resistant rice in Korea.

Recent advances in high-throughput sequencing technologies have enabled large-scale cost-effective genotypic analyses, and consequently, obtaining reliable phenotypic data has now become a major bottleneck in data-driven plant breeding. In order to construct a phenotype database for commercial rice varieties released by the National Institute of Crop Science, Rural Development Administration, we initiated a systematic phenotype evaluation project, with the aim of investigating the major agronomic traits of Korean rice varieties released during the period between 1979 and 2017. Despite the narrow genetic background, we found that the days to heading (DTH) and culm length (CL) of the 297 Korean rice varieties assessed exhibited wide phenotypic variation under different environments. Under normal planting cultivation in 2018, the DTH ranged from 48 to 104 days in Suwon, 46 to 111 days in Wanju, and 39 to 97 days in Miryang, with CL values ranging from 59 to 134 cm, 55 to 122 cm, and 57 to 106 cm, respectively. During early planting cultivation in 2019, the DTH ranged from 56 to 113 days (Suwon), 58 to 109 days (Wanju), and 58 to 100 days (Miryang), with corresponding CL values ranging from 63 to 119 cm, 55 to 93 cm, and 51 to 115 cm. Despite the difference of one month in planting dates in 2018 and 2019, DTH in the different years and regions showed highly significant positive correlations (r=0.90-0.98), whereas CL showed positive but weaker correlations (r=0.45-0.82). Furthermore, we detected a weak, although significant, correlation between DTH and CL in each environment (r=-0.18-0.35). Analyses of additive main effects and multiplicative interaction (AMMI) were conducted for DTH and CL to identify rice varieties with stable phenotypes under different environments. We anticipate that the findings of this study will provide a useful rice phenotype database to facilitate genotype-phenotype association studies and data-driven rice breeding.

Hypoxia caused by water seeding of rice inhibits germination and often leads to serious problems in seedling establishment and early growth. To solve this problem, it is necessary to develop rice cultivars that can stably germinate and grow under anaerobic environments. In this study, we performed QTL analysis on anaerobic germination (AG) tolerance using 139 recombinant inbred lines (RILs) derived from a cross between Milyang23 and Gihobyeo, and identified two QTLs (qAG2.1, qAG2.2) on chromosome 2. The LOD scores at qAG2.1 and qAG2.2 were 3.30 and 5.31, respectively. The phenotypic variances explained by the QTLs were 9.19% and 14.99%, respectively. The japonica cultivar Gihobyeo provided alleles for AG tolerance at both QTLs. While the chromosomal location of qAG2.2 overlapped with previously identified QTLs for AG tolerance, qAG2.1 was detected in a locus that has not been reported previously. The RILs carrying favorable type alleles for the AG tolerance at both QTLs (qAG2.1 + qAG2.2) expressed 41.0% survival rate under the AG condition, which was significantly higher than those of the RILs carrying single QTL, qAG2.1 (22.0%) or qAG2.2 (26.2%). As the favorable alleles for the two QTLs found in this study derived from the japonica cultivar Gihobyeo, it is expected that they would accompany less linkage drag such as shattering and lodging compared to those derived from indica or landraces. The result of this study would provide useful information for improving AG tolerance of japonica rice cultivars that can be used for water seeding cultivation.