Interspecific and intersubspecific crosses have been an important strategy for rice breeding programs to obtain useful characters by expanding genetic diversity. However, the wide cross routinely causes undesirable characters in rice, such as spikelet sterility and poor quality. In this study, we developed near-isogenic lines of R-gene (Xa4+xa5+Xa21+Pi40+Bph18) introgression population to investigate the genetic relationship between the occurrence of poor characters and R-genes induced by MAS. The ANOVA analysis revealed that Pi40, Bph18, and Xa4 were associated with spikelet fertility (SF), ratio of ripened grain (RRG), third internode length (TIL), panicle extraction (PE), and protein content (Pro), whereas others showed no association with the 14 traits tested. In the three-way ANOVA, the impact of two R-genes (Pi40 and Bph18) on the poor characters was independent, with no interaction with others. Quantitative trait locus (QTL) analysis identified QTLs for PE and TIL traits near Pi40, and in particular, QTLs for five traits (SF, RRG, TIL, PE, and Pro) were negatively affected around Bph18. The occurrence of a poor character in R-gene pyramiding lines could be associated with linkage drag caused by the Bph18 gene. We speculate that the development of DNA markers that effectively eliminate poor characters will not only improve breeding efficiency using MAS, but will also help improve traits of japonica rice through wide crossing.

‘Jonong’ is an early maturing whole crop silage (WCS) japonica rice cultivar characterized by a short growth duration and numerous spikelets. It was developed to enhance the adaptability of WCS rice to double-cropping systems. ‘Jonong’ is derived from a cross between ‘Binhae Col.#1’ and ‘Deuraechan’; ‘Binhae Col.#1’ is a semi-early maturing China rice germplasm with numerous spikelets on dense panicles, whereas ‘Deuraechan’ is a high-yielding japonica rice cultivar with numerous spikelets on long panicles. To diversify the genetic variation and shorten the breeding period, an anther culture method was applied to the F₁ plants. ‘Jonong’ was selected through the pedigree method, yield trials, and local adaptability tests, with a high selection pressure for short growth duration and high biomass. The average heading date of ‘Jonong’ was August 1^st, which is 11 days earlier than that of ‘Nokyang’, the standard cultivar for WCS rice. Moreover, the growth duration of ‘Jonong’ is the shortest among all Korean WCS rice cultivars. The culm length of ‘Jonong’ is 88 cm, which 4 cm longer than that of ‘Nokyang’ and the highest among all Korean early maturing rice cultivars. ‘Jonong’ has 149 spikelets per panicle, which is 30 more than that of ‘Nokyang’, and is the highest among all Korean early maturing rice cultivars. ‘Jonong’ exhibits stable premature heading and is tolerant to lodging. It is moderately resistant to leaf blast and resistant to the rice stripe virus. The feed value of ‘Jonong’ in terms of total digestible nutrients is good and comparable to that of ‘Nokyang’. Furthermore, compared with ‘Nokyang’, ‘Jonong’ shows a similar level of dry matter yield and a higher rough rice yield. Therefore, ‘Jonong’, an early maturing WCS japonica rice with short growth duration and numerous spikelets, would be suitable for cultivating in winter forage crop-rice double cropping systems (Registration No. 7274).

Early maturing rice is widely utilized to diversify cropping systems in the Honam Plain, Korea. It is based on the principle of a short growth duration. There is concern regarding quality deterioration of early maturing rice owing to the high temperature during the ripening stage as compared to that for mid and mid-late maturing rice. This study was conducted to analyze six pasting property-related and eight quality traits of six early maturing rice varieties (Jopyeong, Odae, Unkwang, Haedamssal, Jinkwang, and Haedeul) on early, ordinary, and late cultivations, and to interpret the relationships between genotypes and environments. As the cultivation time increased, the ratio of head rice (HR) and glossiness of cooked rice (Toyo value, TY) increased. The cumulative mean temperature of the ripening stage showed a strong negative correlation with HR and TY at all cultivation times. Pasting temperature, peak viscosity (PV), trough viscosity, final viscosity, and breakdown (BD) decreased, whereas setback (SB) increased as the cultivation time was delayed. Pasting properties were affected more by climate conditions in the ripening stage than during the growth stage. Additive main effects and multiplicative interaction analysis revealed that pasting property-related and quality traits were affected more by environment than genotype. Jinkwang and Haedamssal in early and ordinary cultivation and Jinkwang and Haedeul in late cultivation exhibited higher HR and TY and a lower protein content. They also showed higher PV and BD and lower SB, which are characteristics of good eating quality japonica rice. Jinkwang, Haedamssal, and Haedeul are premium-quality, early maturing rice varieties that were recently developed. The cultivation of these varieties could improve the grain quality of early maturing rice at high temperatures during the ripening stage in the Honam Plain.

The cultivation of early maturing rice in the Honam plain area of Korea is increasing to diversify the cropping systems. The cropping systems of this rice are usually classified as early, ordinary, and late cultivations based on transplanting time. The characteristics of varieties vary depending on the cultivations. To evaluate the performance of varieties and interpret the relationships between genotype and environment, nine yield and 17 panicle-related traits of six early maturing rice varieties (Jopyeong, Odae, Unkwang, Haedamssal, Jinkwang, and Haedeul) were characterized on early, ordinary, and late cultivations. Heading date was longer in order of early, ordinary, and late cultivations. The cumulative mean temperature of growth stage was similar for all cultivations. The variation in the number of spikelets per panicle (NS) was mainly due to the variety and the traits related with secondary rachis-branch were affected more by variety than the traits related to primary rachis-branch. The varieties with the highest yield were Haedamssal on early maturing cultivation and Unkwang on ordinary and late cultivations. Haedamssal displayed a panicle-number type plant architecture with relatively higher number of panicles per hill (PN) and average NS. Unkwang exhibited panicle-weight type with many NS and less PN. Additive main effects and multiplicative interaction analysis revealed that, NS and HD were mostly affected by genotype and environment, respectively. Among yield-related traits, NS contributed the most to enhanced yield of varieties in all cultivations. NS could be the target trait of breeding programs intended to improve the yield potential of early maturing rice adaptable to the Honam plain area. However, proper PN should be considered because PN, which was negatively correlated with NS, also affected the yield.