Rice blast is one of the most serious agricultural diseases in the world. Rice blast can be managed using low nitrogen fertilizers, treatment with chemical fungicides, and the most effective resistant varieties. Many genetic resources have been investigated and used along with molecular markers to breed blast-resistant rice varieties. In this study, the genetic diversity of blast resistance genes using 27 functional/linked markers and rice blast incidence over three years was investigated in 296 Korean rice varieties. Blast incidence was determined using a 0-9 scoring system (0=no lesions to 9=dead leaves) in nursery tests. The blast incidence of 296 rice varieties showed a significant correlation between years (r>0.64, p<0.001). The 261 Japonica varieties showed blast resistance compared to 114 mid-late maturing varieties or 96 medium-maturing varieties. 35 Tongil-type varieties also exhibited greater resistance than Japonica varieties. DNA marker-trait association analysis was conducted using 27 DNA markers linked to 19 blast resistance genes. Twelve DNA markers showed significant associations with the average blast incidence over 3 years. The ‘9871.T7E’ marker linked with Pi40 was strongly associated with blast disease, with a phenotypic variance of 24% over 3 years (p<0.001). Among the varieties harboring the Pi40 allele, early maturing varieties accounted for 87%. These results imply that the blast resistance of early maturing Korean varieties is associated with the Pi40 gene. These results will be beneficial for breeding blast-resistant rice in Korea.