Interspecific and intersubspecific crosses have been an important strategy for rice breeding programs to obtain useful characters by expanding genetic diversity. However, the wide cross routinely causes undesirable characters in rice, such as spikelet sterility and poor quality. In this study, we developed near-isogenic lines of R-gene (Xa4+xa5+Xa21+Pi40+Bph18) introgression population to investigate the genetic relationship between the occurrence of poor characters and R-genes induced by MAS. The ANOVA analysis revealed that Pi40, Bph18, and Xa4 were associated with spikelet fertility (SF), ratio of ripened grain (RRG), third internode length (TIL), panicle extraction (PE), and protein content (Pro), whereas others showed no association with the 14 traits tested. In the three-way ANOVA, the impact of two R-genes (Pi40 and Bph18) on the poor characters was independent, with no interaction with others. Quantitative trait locus (QTL) analysis identified QTLs for PE and TIL traits near Pi40, and in particular, QTLs for five traits (SF, RRG, TIL, PE, and Pro) were negatively affected around Bph18. The occurrence of a poor character in R-gene pyramiding lines could be associated with linkage drag caused by the Bph18 gene. We speculate that the development of DNA markers that effectively eliminate poor characters will not only improve breeding efficiency using MAS, but will also help improve traits of japonica rice through wide crossing.

Rice is the most important staple food in Korea. Rice blast, caused by Magnaporthe oryzae, is one of the most devastating diseases in the rice-growing world and in Korea. Eighteen major blast resistance genes were screened in 33 leading Korean japonica varieties using 44 DNA markers. The 33 leading japonica varieties are cultivated in 659,642 ha (90.4%), and a variety of Samkwang is cultivated widely on a nation-wide scale. Four resistance genes, Pia, Pib, Pi19, and Pb1, were detected in 10-21 varieties, and the R-genes of Pii, Pish, Pita/Pita-2, Piz/Piz-t, Pi35, and Pi65(t), were present in 2-5 varieties. Five R-genes, Pit, Pi5, Pi9, pi21, and Pi40, were not detected in the Korean japonica rice varieties. A total of six varieties, two mid-late flowering varieties, Ilmi and Saeilmi, a medium flowering variety Gopum; and three early flowering varieties Jopyeong, Haedamssal, and Haedeul; were resistant to blast nursery screening over 12 years. A variety of Gopum harbored alleles for Piz/Piz-t, and three early flowering varieties, Jopyeong, Haedamssal, and Haedeul, had extensive loci of the multiple-gene family Piz/Piz-t, Pi9, and Pi40 on chromosome 6. Two mid-late flowering varieties, Ilmi and Saeilmi, harbored the Pita-2 gene, and Gopum had Pita. In the japonica rice breeding program, an effective means for enhancing stable resistance to blast would be introduced to 2-3 R genes among resistance genes Pit, Pi5, Pi9, pi21 and Pi40 which were not identified in Korean japonica rice varieties, and resistance genes Pita/Pita-2, Piz-t/Piz-5, to 2-3 R genes among and Pi20 that showed stable resistance in monogenic IRBL lines.

‘Sinjinbaek’ is a bacterial blight (BB)-resistant, mid-late maturing rice cultivar with high grain quality. To diversify the resistance genes and enhance the resistance of Korean rice cultivars against BB, ‘Sinjinbaek’ was developed from a cross between ‘Iksan493’ (cultivar name ‘Jinbaek’) and the F₁ cross between ‘Hopum’ and ‘HR24670-9-2-1’ (‘HR24670’). ‘Jinbaek’ is a BB-resistant cultivar with two BB resistance genes, Xa3 and xa5. ‘Hopum’ is a high grain quality cultivar with the Xa3 resistance gene. ‘HR24670’ is a near-isogenic line that carries the Xa21 gene, a resistance gene inherited from a wild rice species O. longistaminata, in the genetic background of japonica elite rice line ‘Suweon345’. ‘Sinjinbaek’ was selected through the pedigree method, yield trials, and local adaptability tests. Using bioassay for BB races and DNA markers for resistance genes, three resistance genes, Xa3, xa5, and Xa21, were pyramided in the ‘Sinjinbaek’ cultivar. ‘Sinjinbaek’ exhibited high-level and broad-spectrum resistance against BB, including the K3a race, the most virulent race in Korea. ‘Sinjinbaek’ is a mid-late maturing rice cultivar tolerant to lodging. It has multiple disease resistance against BB, rice blast, and stripe virus. The yield of ‘Sinjinbaek’ was similar to that of ‘Nampyeong’. ‘Sinjinbaek’ showed excellent grain appearance, good taste of cooked rice, and enhanced milling performance, and we concluded that it could contribute to improving the quality of BB-resistant cultivars. ‘Sinjinbaek’ was successfully introgressed with the Xa21 gene without the linkage drag negatively affecting its agronomic characteristics. ‘Sinjinbaek’ improved the resistance of Korean rice cultivars against BB by introgression of a new resistance gene, Xa21, as well as by pyramiding three resistance genes, Xa3, xa5, and Xa21. ‘Sinjinbaek’ would be suitable for the cultivation in BB-prone areas since it has been used in breeding programs for enhancing plants’ resistance to BB (Registration No. 7273).

This experiments were carried out to know the response to Brown Planthopper(BPH) resistance genes at rice seedling stage using Biotype 1 for develoment of resistant cultivars. Varieties with Bph1, Bph3 and Bph18 genes showed a very strong resistance response, BpH2, Bph6, bph7 and Bph9 genes exhibited moderate resistance. Bph5 and Bph8 gene retention varieties and Nampyeongbyeo showed a very weak sensitivity in response to BPH. After 72 hours, Nampyeong(no gene) and IR72(Bph3 gene) were showed a feed-preference 690% and 0%, respectively. Results of Antixenosis and seedling resistance response to BPH were grouped into similar by specific resistance genes. Ten days after inoculation, BPH survival rate of vareities with resistance genes were below 30%, whereas Nampyeongbyeo was more than 70%. The results showed that Bph3 and Bph18 genes are highly resistant response against BPH, these genes are very useful for improve the rice cultivars with various resistance genes

This study was conducted to develop the early maturing rice lines with genes conferring resistance to bacterial blight and rice stripe virus to enhance the adaptability in plain area. Unkwang carrying Xa3 was used as a recurrent parent and SR30075 carrying Xa4+xa5+Xa21+Stvb-i was used as a donor parent. RL1(Resistant Line, BC₁F₇), RL2, RL3, RL4, and RL5(BC₂F₆) were bred through bio-assay of K3a race inoculation and phenotypic selection of agronomic traits. The presence of introduced genes was confirmed by testing the resistance levels against bacterial blight and rice stripe virus and then double-checked by using DNA marker. RL1 has all target genes, Xa3+xa5+Xa21+Stvb-i. RL2, RL3, and RL5 have Xa3+Xa21+Stvb-i whereas RL4 has only Xa21. Rice lines carrying Stvb-i showed resistance reaction to rice stripe virus. The combinations of bacterial blight resistant genes(Xa3+xa5+Xa21 and Xa3+Xa21) were found to be promising, as the rice lines carrying these genes enhanced a strong resistant reaction against 16 bacterial blight isolates. Also, the inoculation of K3a race did not alter the brown rice yield, ripened grain ratio and kernel quality of brown rice compared to control. Although RL1 containing all the target resistance genes showed excellent resistance performance, it is not suitable to cultivate in plain area due to instability to lodging, 80% yield level than Unkwang, and low grain quality. RL5 backcrossed twice with Unkwang was found to be a promising line due to its effective resistance gene combination, Xa3+Xa21+Stvb-i and good agronomic traits such as stability to lodging, higher yield and quality compared to Unkwang.

This study was conducted to develop breeding lines carrying bacterial blight resistance genes, Xa2, Xa3, xa5, and Xa21 for enhancing the resistance of early maturing glutinous japonica rice. Resistant lines were developed by backcrossing into early maturing glutinous elite cultivar, Sangjuchalbyeo and phenotypic selection for bacterial blight resistance and agronomic traits. Selected lines were confirmed the incorporation of the resistance genes using DNA markers and evaluated the resistance reaction against four Korean and eleven Philippine bacterial bight races. HR24465 line carrying Xa2 was resistant to Korean races K1, K2, and Philippine race 9a. HR24666 line carrying Xa3 was moderately resistant or resistant to races except for Korean race K3a and Philippine race 6. Resistant lines carrying xa5 were resistant to all races except for Philippine race 6. HR24669 line carrying Xa21 was moderately resistant or resistant to races except for Korean race K1 and Philippine race 10. Yield-related traits of breeding lines exhibited similar characteristics to Sangjuchalbyeo. These resistant lines could be useful breeding materials for improving the resistance of early maturing glutinous japonica rice against Xanthomonas oryzae pv. oryzae.