To stably produce domestic wheat under water-scarce environmental conditions due to climate change, root characteristics with excellent water utilization rates are crucial. In this study, we analyzed the root and grain phenotypes of 37 domestic wheat varieties over a two-year period by combining the results of genetic mutations related to semi-dwarfing and grain size. Root length was positively correlated with maximum root depth (r=0.76**) and total seminal root length (r=0.54**), whereas it was negatively correlated with the number of roots (r=-0.33**) and root angles (r=-0.51**). The thousand-kernel weight was positively correlated with embryo width (r=0.34**) and embryo area (r=0.33**) but was not correlated with other root traits. Embryo length was positively correlated with the number of roots (r=0.34**) and coleoptile length (r=0.42**). Phenotypic analyses of roots and grains, along with genotypic analyses of semi-dwarfing (Rht-B1 and Rht-D1) and grain size (TaCWI-4A, TaCWI-5D, TaGW2-6A, TaSus2-2B) genes, revealed that the Rht-D1b genotype led to reduced root depth, increased root angles, and reduced coleoptile length. TaCwi-A1, TaCWI-5D, TaSus2-2B, and TaGW2-6A, possessing the alleles TaCwi-A1a, Hap-5D-C, Hap-L, and Hap-6A-G associated with a larger grain size, resulted in an increased number of roots and root depth. Domestic wheat varieties were categorized into three clusters based on root, grain, and coleoptile trait characteristics, with 15 varieties in Cluster I, 9 in Cluster II, and 13 in Cluster III. The results of this study can be utilized in basic research to develop varieties that can produce stable domestic wheat by selecting resources with excellent root growth and seed characteristics.

Watermelons are grafted to prevent soil-borne diseases such as Fusarium wilt (FW) and increase their resistance to abiotic stress. Root-knot nematodes (RKN) are a contributing factor to economic loss in several cucurbits, including watermelon. Growing resistance varieties is an effective way to reduce the damage caused by soil-borne diseases. Resistance evaluation was performed on 50 watermelon lines to select rootstocks resistant to FW and RKN. Fusarium oxysporum f. sp. niveum race 2 was inoculated into 10-day-old seedlings using a root dipping method, and resistance was evaluated for four weeks. The 37-day-old watermelon seedlings were inoculated with Meloidogyne incognita and evaluated 60 days later. Three lines (IT199860, PI296341-6, and PI532811) were resistant to FW race 2, while one line (PI494527) was moderately resistant. Three lines (PI296341-5, PI457916-2, and PI457916-5) were RKN resistant. The PI296341-6 line was selected for its resistance to FW and moderate resistance to RKN. These findings imply that the identified resistant lines can be used in rootstock breeding programs against FW and/or RKN.

In this study, genotype analysis was conducted using the Fluidigm system with 13 SNP markers related to anthracnose, powdery mildew, phytophthora root rot, cucumber mosaic virus (CMV), potyvirus, and tobacco mosaic virus (TMV) resistance. A total of 25,350 data points were obtained, 8.2% of which indicated resistance genotypes. Resources having perfect resistance genotype to each disease-related molecular marker set were 58 accessions for anthracnose, 57 for powdery mildew, 246 for phytophthora root rot, and 765 for CMV. There was no resource having a perfect resistance genotype of all three potyvirus-related molecular SNP markers including pvr1, pvr2 (123457), and pvr2 (689). Thirty-seven accessions for pvr1, 349 accessions for pvr2 (123457), and 23 accessions for pvr2 (689) were identified as resources with resistance genotype. No resource with the TMV-resistance genotype was found in this study. The resources with complex resistance genotypes of anthracnose and powdery mildew were 55 accessions, and they were mainly Capsicum baccatum. Among these, seven accessions had a three-disease combined resistance genotype with phytophthora root rot. Thirty-six accessions, 16 accessions, and nine accessions each had resistance genotypes of the three potyvirus-related markers. These resources also had CMV and phytophthora root rot resistance genotypes, and they were mainly Capsicum chinense. The statistical analysis considering the evaluated resistance genotypes, revealed that the anthracnose resistance genotype showed a tendency to be linked with powdery mildew resistance genotype. The potyvirus-related marker pvr1 was positively correlated with Phytophthora root rot markers.

Root development at the seedling stage is an important trait for the early growth of rice. In this study, the root length and weight of 211 Korean landrace rice at the seedling stage were evaluated, and the average root length and weight were 6.94 cm and 48.18 mg, respectively. Principal component analysis (PCA) of 211 accessions based on 70,849 SNPs presented three subgroups. Two quantitative trait loci (QTLs) associated with root length were detected on chromosomes 3 and 6 using genome-wide association study (GWAS). Four haplotypes were identified using associated SNPs for the two root length QTLs. The average root length of Hap2 and Hap 3 was 7.32 cm and 6.56 cm, respectively, and were significantly different. Gene expression analysis in the candidate regions of QTLs for root length at the seedling stage showed that several genes were expressed in the root. QTLs associated with root length at the seedling stage identified in this study may be applied to improve the root length trait and detect candidate genes.

The range of peach rootstocks currently available worldwide has increased dramatically in the last few decades. However, peach rootstocks in Republic of Korea still primarily use mainly seeds of different species imported from China. This kind of rootstocks is not ideal for clonal production and uniformity since it is a varietal blend of genotypes with differing physical characteristics. We collected genetic resources of 214 native peaches and determined 156 native peaches for breeding the suitable peach rootstock with easy propagation, uniform growth habit, and the resistance to biotic and abiotic stresses under domestic conditions. ‘PR1’ peach rootstock [Prunus persica (Batsch) L.] was originated from open-pollinated seeds of ‘PHJN0129’ collected in 2001 at Suncheon. ‘PR1’ peach rootstock was preliminarily designated as ‘PH193’ in 2002 and then grafted onto ‘Maotao’ (P. persica) wild peach seedling rootstocks. In Hwasung, three grafted trees were observed from 2005 to 2009 and seen to have the properties of ‘PH193’. In Suwon, one-year- old seedlings were observed from 2010 to 2014 and showed to have the commercial availability of ‘PH193’ when compared with 5 peach rootstocks (Tsukuba No.4, GF677, Nemaguard, Yumyeong, and imported peach seeds from China). ‘PH193’ was finally selected in 2014, owing to its superior seed germination, graft compatibility, resistance to nematodes and crown gall, and low mortality. It was named ‘PR1’ to indicate the first peach rootstock in Republic of Korea and was released for commercial use in 2015. (Grant Number 5896).

Kimchi cabbage (Chinese cabbage) is a very common Korean traditional vegetable, cultivated across 32,000 ha, which accounts for about 13% of the total vegetable cultivation area in Korea. Since 2010, frequent occurrences of extreme weather conditions caused a shortage of summer, winter, and autumn Kimchi cabbage. Therefore, the National Institute of Horticultural and Herbal Science (NIHHS) selected a haploid breeding method of microspore culture to develop inbred lines that show resistance under extremely low or high temperature for Kimchi cabbage production. ‘Wonkyo20051ho’ is a double-haploid (DH) inbred line developed using the microspore culture method. Eleven heat resistant parental plants were selected through summer cultivation of 37 resources collected in 2014. Microspore culture was efficient in regenerating four resources, from which 13 DH inbred lines were developed. After artificially inoculating ‘Seosan’ clubroot with low concentration inoculum, 7 inbred lines showing moderate resistance were selected. As a result of the autumn cultivation of 83 breeding plants, including 6 selected inbred lines, the ‘18-FH98’ inbred line forming tight heads with yellow inner leaf under low temperature was finally selected during the 2018 autumn field trial. The selected DH inbred line was named ‘Wonkyo20051ho’ and is expected to be a valuable breeding material possessing tolerance to low temperature and clubroot.

FT-IR spectroscopy, combined with multivariate analysis, was used to determine whether 67 different wild and rootstock peach accessions could be discriminated from each other. Genomic DNA was isolated from leaves, and the purified genomic DNA was analyzed by FT-IR spectroscopy in the spectral region from 1800 to 800 cm^-1. FT-IR spectra showed that typical spectral differences existed in the frequency regions of N-H stretching (amide I), C=O stretching vibrations (amide II), and PO₂⁻ ionized asymmetric and symmetric stretching. Principal component analysis (PCA) was able to discriminate three groups. The partial least squares discriminant analysis (PLS-DA) yielded more clear discrimination among the three groups of peach accessions. The FT-IR spectral differences might be directly related to subtle changes in the base functional group and backbone structures of genomic DNA. This technique could provide a research foundation for FT-IR spectral-based rapid diagnosis, selection, and discrimination of peach accessions for rootstock.

To identify and apply tissue-specific promoters is one of the major challenges in plants genetic engineering for optimizing efficient expression of interest genes in appropriate tissues. In this research, open-source database information of Arabidopsis thaliana was adapted to determine root-specific expressed promoter region. A total seven sequences that might function as a root-specific promoter element were initially isolated from Arabidopsis genomic DNA. Then seven promoters were cloned into pBGWFS7 in which β-glucuronidase (gus) and green fluorescent protein (gfp) genes were linked. The GUS activities were measured in different tissues of transgenic Arabidopsis by both histochemical GUS staining and fluorescent 4 methylumbelliferyl β-D-glucuronide (MUG) assay. To confirm root-specific expression, GFP-confocal microscope analysis was conducted in Arabidopsis transgenic plant. As a result, the five promoters showed strong GUS activity in the root tissue as compared with the CaMV35S promoter. To test crop application availability as a root-specific promoter, seven promoters were introduced into tomato plants and confirmed transient expression using Agrobacterium rhizogenesis ARqua1 root-nodule inducible strain. Two promoters showed that gus genes were specifically expressed in roots of transgenic tomato plant. Taken together, the novel seven promoters showed specific activity in root suggesting that it is applicable in crop improvement.

Kimchi cabbage (known as Chinese cabbage) is one of the major vegetable in Korea. An inbred line ‘Wonkyo20042ho’, was developed by the National Institute of Horticultural & Herbal Science, RDA in South Korea. The first cross carried out using ‘Norang gwandong’ which had been introduced to Korea in 2007. During segrerating generations, bud pollination carried out using selected plants to fix genetic materials. ‘Wonkyo20042ho’ inbred line was finally selected by breeders from commercial companies at the field exhibition at 2011. The horticultural traits of ‘Wonkyo20042ho’ inbred line were as follows; half-open head, yellow inner leaf colour, and dark green outer leaf colour. The average head weight was 1899.2g, head width and height were 17.5cm and 27.9cm, respectively. Numbers of outer and internal leaves were 14.3 and 66.5, respectively. Harvest maturity was mid-late maturing type and average of seed yield for three years was 723 seeds. In addition, ‘Wonkyo20042ho’ inbred line showed resistance to clubroot disease (race 4 single spore isolation) and possessed thin leaves and small sized head.