In Asia, where climate change is increasing the damage caused by cold stress, it is crucial to cultivate varieties with enhanced cold tolerance. In this study, the Tongil variety ‘Hanareum2’ was crossed with the Japonica variety ‘Unkwang’ to improve plant growth ability at low temperatures during the seedling stage. This led to the development of 234 recombinant inbred line (RIL) populations, and a linkage map was constructed using 249 single nucleotide polymorphism (SNP) markers. The RIL populations were transplanted to the field one month earlier than the standard transplanting period, and plant height (PH), leaf number (LN), and dry weight (DW) were measured to identify quantitative trait loci (QTL) associated with plant growth ability at low temperatures during the seedling stage. QTLs related to cold tolerance, particularly those carrying the ‘Unkwang’ allele, were identified in the PH and DW traits. For PH, the QTLs qPH1, qPH5, and qPH8 were located on chromosomes 1, 5, and 8, respectively. Regarding DW, the QTLs qDW1, qDW8, and qDW9 were identified on chromosomes 1, 8, and 9. For the LN trait, qLN3 carrying the ‘Hanareum2’ allele was located on chromosome 3. If the identified QTLs are utilized, they can be incorporated into breeding programs for plant growth at low temperatures during the seedling stage.

Bakanae disease, also known as the foolish seedling disease, caused by Gibberella fujikuroi, is a serious issue in Korea. Since 2007, there has been a rapid increase in the occurrence of bakanae disease; this has caused severe yield loss to rice farmers every year. The most reliable and economical solution for managing bakanae disease is to cultivate resistant varieties; however, there are only a few rice varieties in Korea that can withstand this disease. Therefore, this study aimed to evaluate the resistance of 61 major rice varieties which account for 89% of the total rice cultivation area. Only six varieties showed intermediate or higher resistance to bakanae disease; this included Anpyeong and Samkwang. The genetic inconsistency between the bioassay results and the allele types of 12 molecular markers (associated with four QTLs) ranged from 4.7% to 48.7%. Therefore, more accurate markers, such as gene-based markers, are essential for monitoring general breeding programs or gene pyramiding.

Bakanae disease is caused by several species of Fusarium and imposes serious limitations to rice production worldwide. The incidence of this disease is increasing in the top rice-growing countries. No rice variety has been found to be completely resistant to this disease. Thus, higher resistance to the disease may be a cost saving solution preferable to the application of fungicides. ‘Anpyeong’ was derived from the cross between ‘YR24982-9-1’ and ‘Saeilmi’ in 2012 and selected as the promising line, ‘YR30389-B-2GH-103’; it was further selected and designated as ‘Milyang 313’ in 2016. The local adaptability test for ‘Milyang 313’ was conducted at five locations from 2016 to 2018 and the cultivar was named ‘Anpyeong’. The heading date for the medium-late maturing cultivar ‘Anpyeong’ was August 13. The ‘Anpyeong’ culm was 77 cm long and had 115 spikelets per panicle. The brown rice 1,000 grain-weight was 22.2 g, which is higher than that of ‘Nampyeong’. This variety is resistant to blast disease and rice stripe virus, but susceptible to bacterial blight and insect pest. The potential ‘Anpyeong’ yield was approximately 562 kg/10 a at ordinary fertilizer level in the local adaptability test and for three years. ‘Anpyeong’ harboring the qBK1 gene derived from a tongil type rice ‘Shingwang’ is moderately resistant to bakanae disease (Registration No. 8135).

Rice doubled haploid (DH) lines derived from crosses of the indica cultivar 93-11 and japonica line Milyang352 were used in genetic mapping and QTL analysis studies of days to heading (DTH), an important trait that controls rice yield and biomass. QTL mapping was conducted using the inclusive composite interval mapping method. We used 234 single-nucleotide polymorphic markers in the whole-genome region, including 100 KASP markers and 134 Fluidigm markers, to construct a genetic map. DH populations were raised in Milyang, Korea, over three different periods. Two major DTH QTLs, qDTH3-1 and qDTH7, were detected under natural conditions in Milyang, and explained 14.88%~24.56% and 24.20%~37.39% of the phenotypic variation, respectively, in 93-11×Milyang352 DH populations. During three different rice cultivation periods, qDTH3-1 and qDTH7 were repeatedly detected with significant logarithm of the odds scores and phenotypic variability explained. The findings of this study will make a valuable contribution to breeding high-yielding and early-maturing rice in Korea.

Bakanae disease is an important fungal disease caused by Gibberella fujikuroi. Incidence of rice bakanae disease creates serious problems in the foremost rice producing countries, affecting more or less all known rice cultivars. Breeding rice cultivars resistant to bakanae disease will thus be a cost-effective alternative to the application of fungicides. ‘MY299BK’ was derived from a cross between YR24982-9-1 and ‘Ilpum’ in 2008. A promising line, YR28297-1-38-1-1, was selected from among the progeny and designated ‘Milyang299’ in 2013. The local adaptability test of ‘Milyang299’ was carried out at five locations from 2014 to 2016 and named ‘MY299BK’. The heading date of ‘MY299BK’ was Aug. 15, typical for a medium-late maturing cultivar. Its culm was 71 cm long, there were 114 spikelets per panicle, and 1,000 grain-weight of brown rice was 23.4 g; these parameters were similar to those of ‘Nampyeong’. ‘MY299BK’ cultivar was resistant to blast and rice stripe virus, but susceptible to bacterial blight and insect pests. Its yield potential was about 566 kg/10 a at ordinary fertilizer level in a three-year-long local adaptability test. ‘MY299BK’ resistance to bakanae is conferred by the qBK1 gene derived from a tong-il type rice ‘Shingwang’ (Registration No. 7651).

Limitation of genetic diversity in japonica rice breeding populations is often identified as a potential obstacle for the development of high yielding cultivars. The use of diverse germplasm in rice breeding has been suggested as one way of combating this problem. This study was conducted to improve the genetic diversity for rice, by developing an advanced backcross population derived from a backcross ‘Junam’ as recurrent parent and ‘IR72’ as a donor parent. Among them, we selected a promising line ‘YR24438-B-B-B-B-132’ containing bacterial blight resistance gene Xa4. Testing in the replicated yield trial in 2009, the ‘YR24438-B-B-B-B-132’ line was selected, and it was designated as ‘Milyang298’. The local adaptability test of ‘Milyang298’ was carried out at three locations from 2014 to 2016 and it was named ‘MY298BB’. The average culm length in the replicated yield trials was 87 cm, which is 15 cm taller than recurrent parent ‘Junam’. Number of spikelets per panicle was significantly lower than in ‘Junam’ but the number of tillers per hill was higher. This variety is resistant to bacterial blight race K1, K2, K3, and K3a.However ‘MY298BB’ showed early leaf senescence at the mature stage and the chlorophyll content of ‘MY298BB’ was significantly lower than that of the recurrent parent ‘Junam’. Moreover the grain filling ratio and yield were significantly lower in ‘MY298BB’ than those of recurrent parent ‘Junam’. Therefore, understanding the leaf senescence mechanism would be useful for improving yield potential in rice.

Rice stripe virus (RSV) is one of the major constraints in rice production which is transmitted by the small brown plant hopper, Laodelphax striatellus. Identifying new resistance genes from diverse sources is important for rice breeding programs to enhance the resistance level and/or to overcome the breakdown of resistance genes. This study was conducted to identify novel sources of resistance against RSV. We used five RSV resistant varieties that do not harbor Stv-bⁱ. The presence of known genes for RSV resistance was identified using the InDel7 marker for Stv-bⁱ, two Indel (Sid primer set) markers for Stv-b, and DNA sequence analysis for OsSOT1. We revealed that two varieties, 02428 (IT236925) and Tung Ting Wan Hien 1, are novel RSV resistance sources.

Bakanae (foolish seedling) disease caused by Gibberella fujikuroi creates serious problems in the foremost rice growing countries. This study was conducted to identify new resistance genetic sources to Bakanae disease. Bioassay showed that 11 varieties including Gwangmyeongbyeo, Hawn, Wonseadaesoo, Erguailai etc. were resistant to bakanae disease among 254 rice germplasm. Mismatch ratio between phenotype on bakanae disease bioassay and allele type of RM9, a SSR marker closely linked the bakanae disease resistant QTL, qBK1, were 38.3%. These results suggest that RM9 might be used for selecting qBK1, but it cannot be used for wide range of rice germplasm. Resistant germplasm in this study might be have resistant genes different from qBK1. The eleven varieties resistant to selected in this study will be used to identify new resistant alleles or genes to improve bakanae disease resistance in rice.